Peptide Modeling

📌 Protein-Protein Docking and Epitope Analysis

This video shows how to dock two proteins, protein to peptide or peptide to RNA, before identifying interacting residues and de...
Jan-15-2025

📌 Protein Properties and Liabilities Analysis

This video demonstrates how to calculate protein properties and assess liabilities on both a static structure and an ensemble o...
Jan-23-2025

Interactive Structure-Based Peptide Optimization

This video covers MOE applications for interactive structure-based design, including active site visualization, protein-peptide...
Oct-18-2023

Finding key contacts for a protein-protein interface using Protein Contacts

This video shows how to analyze key contacts between; a protein–protein interface, for a given loop or region, or a specific re...
Oct-18-2023

Peptide Binding Analysis and Optimization

The webinar covers methods for analyzing and optimizing peptide-protein interactions in the active site. Using a model system c...
Apr-18-2024

Using Surface and Maps to Understand Properties and HotSpots

This video shows how to generate visual representations of molecular surfaces and hotspots with examples applied to a protein-l...
Feb-09-2024

Building molecules using the Protein Builder

This video shows how to build a peptide from scratch; mutating residues, control backbone geometries, repacking and exploring r...
Feb-01-2024

Modeling Cyclic Peptides with MOE

Cyclic peptides have long been of interest as potential therapeutics, but these “big small molecules” present many challenges f...
Dec-18-2023

LowModeMD: Conformational Search of Macrocycles and Protein Loops

We present a method for conformational search of complex molecular systems such as macrocycles and protein loops. The method is...
Nov-21-2023

Analyzing and comparing Protein-Ligand complexes using Ligand Interactions

This video shows how to generate a Ligand Interaction diagram for identifying key interactions, steric fit, potential binding o...
Nov-21-2023