🆕 Sampling and Building Loops with the Loop Modeler
This video shows how to sample and build loop conformations. The Loop and Linker Modeler can be used to sample loops for homology models, build missing loops from X-ray structures, or generate linker units for fusion proteins.
[link]video.chemcomp[d]com/watch/3WhEnZtfZiLvijBgG8yzgD?second=47&autoplay=1[label]0:47 Identifying the missing loop [link end]
[link]video.chemcomp[d]com/watch/3WhEnZtfZiLvijBgG8yzgD?second=94&autoplay=1[label]1:34 Running the Loop Modeler [link end]
[link]video.chemcomp[d]com/watch/3WhEnZtfZiLvijBgG8yzgD?second=173&autoplay=1[label]2:53 Browsing the backbone conformation of loop candidates [link end]
[link]video.chemcomp[d]com/watch/3WhEnZtfZiLvijBgG8yzgD?second=194&autoplay=1[label]3:14 Building sidechains and repacking the environment [link end]
[link]video.chemcomp[d]com/watch/3WhEnZtfZiLvijBgG8yzgD?second=236&autoplay=1[label]3:56 Browsing the final loop structures [link end]
