Advanced Protein Alignment and Superposition
This video shows how to align and superpose multiple proteins, handle multiple chains, use dendrograms and other visualization tools to help with interactive analyses.
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=57&autoplay=1[label]0:57 Organizing chains in the Sequence Editor[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=100&autoplay=1[label]1:40 Annotating the sequence[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=200&autoplay=1[label]3:20 Displaying sequence similarity in the Sequence Editor[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=250&autoplay=1[label]4:10 Defining alignment groups using Set Up Chains[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=360&autoplay=1[label]6:00 Aligning by sequence only[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=402&autoplay=1[label]6:42 Defining superposition groups using Set Up Chains[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=540&autoplay=1[label]9:00 Exploring structural superposition options[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=608&autoplay=1[label]10:08 Analyzing sequences using Dendrograms[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=695&autoplay=1[label]11:35 Analyzing superposition using Plot RMSD[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=753&autoplay=1[label]12:33 Aligning an additional structure to an existing alignment[link end]
[link]video.chemcomp[d]com/watch/undLt7XrNBCj48bbQB3JZA?second=844&autoplay=1[label]14:04 Defining blocks for group-to-group alignments[link end]
